Detailed information of SNP:
|
SNP ID:
sf1114021461(Gbrowse)
Chromosome: chr11 Position: 14021461 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.43% | 42.57% |
| All Indica | 796 | 88.69% | 11.31% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114021461 | G->A | LOC_Os11g25400(LOC_Os11g25400.1) | Synonymous |