Detailed information of SNP:
|
SNP ID:
sf1114027231(Gbrowse)
Chromosome: chr11 Position: 14027231 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 60.03% | 39.97% |
| All Indica | 790 | 92.41% | 7.59% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114027231 | A->G | INTERGENIC | None |