Detailed information of SNP:
|
SNP ID:
sf1114132502(Gbrowse)
Chromosome: chr11 Position: 14132502 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 95.38% | 4.62% |
| All Indica | 768 | 91.80% | 8.20% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 86.97% | 13.03% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114132502 | G->A | LOC_Os11g25590(LOC_Os11g25590.1) | SNPs that introduce stop codons |