Detailed information of SNP:
|
SNP ID:
sf1114133019(Gbrowse)
Chromosome: chr11 Position: 14133019 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 80.53% | 19.47% |
| All Indica | 721 | 66.16% | 33.84% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 321 | 73.21% | 26.79% |
| Indica II | 206 | 64.08% | 35.92% |
| Indica Intermediate | 194 | 56.70% | 43.30% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114133019 | G->A | LOC_Os11g25590(LOC_Os11g25590.1) | Synonymous |