Detailed information of SNP:
|
SNP ID:
sf1114133045(Gbrowse)
Chromosome: chr11 Position: 14133045 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 79.32% | 20.68% |
| All Indica | 721 | 63.94% | 36.06% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 321 | 71.34% | 28.66% |
| Indica II | 207 | 62.32% | 37.68% |
| Indica Intermediate | 193 | 53.37% | 46.63% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114133045 | C->T | LOC_Os11g25590(LOC_Os11g25590.1) | Non-Synonymous SNP |