Detailed information of SNP:
|
SNP ID:
sf1114137839(Gbrowse)
Chromosome: chr11 Position: 14137839 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 51.39% | 48.61% |
| All Indica | 787 | 78.14% | 21.86% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 80.32% | 19.68% |
| Indica II | 206 | 68.93% | 31.07% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114137839 | C->T | INTERGENIC | None |