Detailed information of SNP:
|
SNP ID:
sf1114154247(Gbrowse)
Chromosome: chr11 Position: 14154247 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1309 | 86.78% | 13.22% |
| All Indica | 689 | 75.04% | 24.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 325 | 78.46% | 21.54% |
| Indica II | 182 | 73.08% | 26.92% |
| Indica Intermediate | 182 | 70.88% | 29.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114154247 | C->T | INTERGENIC | None |