Detailed information of SNP:
|
SNP ID:
sf1114164439(Gbrowse)
Chromosome: chr11 Position: 14164439 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1242 | 73.27% | 26.73% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 331 | 9.67% | 90.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 203 | 14.78% | 85.22% |
| Tropical Japonica | 78 | 1.28% | 98.72% |
| Japonica Intermediate | 50 | 2.00% | 98.00% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114164439 | C->T | INTERGENIC | None |