Detailed information of SNP:
|
SNP ID:
sf1114184622(Gbrowse)
Chromosome: chr11 Position: 14184622 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.98% | 9.02% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114184622 | G->A | LOC_Os11g25670(LOC_Os11g25670.1) | SNPs that introduce stop codons |