Detailed information of SNP:
|
SNP ID:
sf1114203070(Gbrowse)
Chromosome: chr11 Position: 14203070 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 64.29% | 35.71% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 493 | 4.87% | 95.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114203070 | A->G | LOC_Os11g25720(LOC_Os11g25720.1) | INTRON |