Detailed information of SNP:
|
SNP ID:
sf1114206338(Gbrowse)
Chromosome: chr11 Position: 14206338 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1306 | 92.04% | 7.96% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 386 | 73.83% | 26.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 265 | 64.91% | 35.09% |
| Tropical Japonica | 73 | 97.26% | 2.74% |
| Japonica Intermediate | 48 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114206338 | C->T | LOC_Os11g25720(LOC_Os11g25720.1) | INTRON |