Detailed information of SNP:
|
SNP ID:
sf1114336368(Gbrowse)
Chromosome: chr11 Position: 14336368 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 86.05% | 13.95% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 437 | 61.78% | 38.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 295 | 80.68% | 19.32% |
| Tropical Japonica | 83 | 8.43% | 91.57% |
| Japonica Intermediate | 59 | 42.37% | 57.63% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114336368 | A->G | LOC_Os11g25950(LOC_Os11g25950.1) | INTRON |