Detailed information of SNP:
|
SNP ID:
sf1114405609(Gbrowse)
Chromosome: chr11 Position: 14405609 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 58.31% | 41.69% |
| All Indica | 778 | 91.52% | 8.48% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 360 | 93.61% | 6.39% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114405609 | T->C | INTERGENIC | None |