Detailed information of SNP:
|
SNP ID:
sf1114406121(Gbrowse)
Chromosome: chr11 Position: 14406121 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 61.43% | 38.57% |
| All Indica | 792 | 76.39% | 23.61% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 372 | 71.77% | 28.23% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 207 | 78.74% | 21.26% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114406121 | A->G | INTERGENIC | None |