Detailed information of SNP:
|
SNP ID:
sf1114406172(Gbrowse)
Chromosome: chr11 Position: 14406172 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1286 | 79.39% | 20.61% |
| All Indica | 677 | 87.89% | 12.11% |
| All Japonica | 495 | 64.65% | 35.35% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 317 | 89.59% | 10.41% |
| Indica II | 183 | 91.26% | 8.74% |
| Indica Intermediate | 177 | 81.36% | 18.64% |
| Temperate Japonica | 333 | 52.85% | 47.15% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114406172 | T->G | LOC_Os11g26000(LOC_Os11g26000.1) | Non-Synonymous SNP |