Detailed information of SNP:
|
SNP ID:
sf1114406440(Gbrowse)
Chromosome: chr11 Position: 14406440 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 90.61% | 9.39% |
| All Indica | 734 | 83.24% | 16.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 346 | 89.31% | 10.69% |
| Indica II | 191 | 78.53% | 21.47% |
| Indica Intermediate | 197 | 77.16% | 22.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114406440 | C->T | LOC_Os11g26000(LOC_Os11g26000.1) | Non-Synonymous SNP |