Detailed information of SNP:
|
SNP ID:
sf1114407536(Gbrowse)
Chromosome: chr11 Position: 14407536 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 77.81% | 22.19% |
| All Indica | 729 | 84.50% | 15.50% |
| All Japonica | 497 | 65.19% | 34.81% |
| Aus | 61 | 93.44% | 6.56% |
| Indica I | 345 | 89.57% | 10.43% |
| Indica II | 196 | 82.65% | 17.35% |
| Indica Intermediate | 188 | 77.13% | 22.87% |
| Temperate Japonica | 335 | 53.13% | 46.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114407536 | T->C | LOC_Os11g26000(LOC_Os11g26000.1) | Synonymous |