Detailed information of SNP:
|
SNP ID:
sf1114409713(Gbrowse)
Chromosome: chr11 Position: 14409713 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 96.09% | 3.91% |
| All Indica | 763 | 93.97% | 6.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 362 | 96.96% | 3.04% |
| Indica II | 201 | 89.55% | 10.45% |
| Indica Intermediate | 200 | 93.00% | 7.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114409713 | A->G | INTERGENIC | None |