Detailed information of SNP:
|
SNP ID:
sf1114413494(Gbrowse)
Chromosome: chr11 Position: 14413494 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 91.12% | 8.88% |
| All Indica | 794 | 99.12% | 0.88% |
| All Japonica | 481 | 75.68% | 24.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 320 | 66.25% | 33.75% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114413494 | A->T | LOC_Os11g26010(LOC_Os11g26010.1) | UTR_3_PRIME |