Detailed information of SNP:
|
SNP ID:
sf1114413613(Gbrowse)
Chromosome: chr11 Position: 14413613 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 57.48% | 42.52% |
| All Indica | 773 | 89.65% | 10.35% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 362 | 91.44% | 8.56% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 205 | 85.85% | 14.15% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114413613 | A->G | LOC_Os11g26010(LOC_Os11g26010.1) | UTR_3_PRIME |