Detailed information of SNP:
|
SNP ID:
sf1114437229(Gbrowse)
Chromosome: chr11 Position: 14437229 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 87.19% | 12.81% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 446 | 62.56% | 37.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 310 | 50.97% | 49.03% |
| Tropical Japonica | 77 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 74.58% | 25.42% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114437229 | A->G | INTERGENIC | None |