Detailed information of SNP:
|
SNP ID:
sf1114439280(Gbrowse)
Chromosome: chr11 Position: 14439280 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 95.70% | 4.30% |
| All Indica | 785 | 95.03% | 4.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 68.97% | 31.03% |
| Indica I | 367 | 94.55% | 5.45% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114439280 | G->A | LOC_Os11g26050(LOC_Os11g26050.1) | Non-Synonymous SNP |