Detailed information of SNP:
|
SNP ID:
sf1114475353(Gbrowse)
Chromosome: chr11 Position: 14475353 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 63.06% | 36.94% |
| All Indica | 776 | 79.64% | 20.36% |
| All Japonica | 495 | 37.58% | 62.42% |
| Aus | 61 | 78.69% | 21.31% |
| Indica I | 366 | 77.60% | 22.40% |
| Indica II | 203 | 85.22% | 14.78% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 333 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114475353 | T->C | INTERGENIC | None |