Detailed information of SNP:
|
SNP ID:
sf1114525993(Gbrowse)
Chromosome: chr11 Position: 14525993 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 64.02% | 35.98% |
| All Indica | 789 | 98.48% | 1.52% |
| All Japonica | 489 | 5.11% | 94.89% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 88 | 2.27% | 97.73% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114525993 | G->A | LOC_Os11g26180(LOC_Os11g26180.1) | INTRON |