Detailed information of SNP:
|
SNP ID:
sf1114566745(Gbrowse)
Chromosome: chr11 Position: 14566745 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 95.25% | 4.75% |
| All Indica | 707 | 91.37% | 8.63% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 322 | 88.51% | 11.49% |
| Indica II | 193 | 92.75% | 7.25% |
| Indica Intermediate | 192 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114566745 | C->T | INTERGENIC | None |