Detailed information of SNP:
|
SNP ID:
sf1114589266(Gbrowse)
Chromosome: chr11 Position: 14589266 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 86.79% | 13.21% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 494 | 65.59% | 34.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 82.34% | 17.66% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114589266 | G->A | LOC_Os11g26290(LOC_Os11g26290.1) | Non-Synonymous SNP |