Detailed information of SNP:
|
SNP ID:
sf1114603278(Gbrowse)
Chromosome: chr11 Position: 14603278 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1233 | 58.39% | 41.61% |
| All Indica | 639 | 29.58% | 70.42% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 54 | 31.48% | 68.52% |
| Indica I | 293 | 33.45% | 66.55% |
| Indica II | 166 | 25.30% | 74.70% |
| Indica Intermediate | 180 | 27.22% | 72.78% |
| Temperate Japonica | 330 | 98.18% | 1.82% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 54.29% | 45.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114603278 | G->A | LOC_Os11g26320(LOC_Os11g26320.1) | Non-Synonymous SNP |