Detailed information of SNP:
|
SNP ID:
sf1114606246(Gbrowse)
Chromosome: chr11 Position: 14606246 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 88.46% | 11.54% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 491 | 68.43% | 31.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 329 | 56.53% | 43.47% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114606246 | T->C | INTERGENIC | None |