Detailed information of SNP:
|
SNP ID:
sf1114636045(Gbrowse)
Chromosome: chr11 Position: 14636045 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 53.66% | 46.34% |
| All Indica | 715 | 85.73% | 14.27% |
| All Japonica | 494 | 3.85% | 96.15% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 337 | 88.72% | 11.28% |
| Indica II | 192 | 85.42% | 14.58% |
| Indica Intermediate | 186 | 80.65% | 19.35% |
| Temperate Japonica | 332 | 4.52% | 95.48% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114636045 | T->C | INTERGENIC | None |