Detailed information of SNP:
|
SNP ID:
sf1114664688(Gbrowse)
Chromosome: chr11 Position: 14664688 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 97.03% | 2.97% |
| All Indica | 796 | 95.60% | 4.40% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114664688 | A->G | INTERGENIC | None |