Detailed information of SNP:
|
SNP ID:
sf1114677733(Gbrowse)
Chromosome: chr11 Position: 14677733 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 79.85% | 20.15% |
| All Indica | 725 | 95.31% | 4.69% |
| All Japonica | 495 | 57.58% | 42.42% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 337 | 94.36% | 5.64% |
| Indica II | 190 | 97.37% | 2.63% |
| Indica Intermediate | 198 | 94.95% | 5.05% |
| Temperate Japonica | 334 | 77.54% | 22.46% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114677733 | G->A | LOC_Os11g26440(LOC_Os11g26440.1) | Non-Synonymous SNP |