Detailed information of SNP:



SNP ID: sf1114678043(Gbrowse)

Chromosome: chr11

Position: 14678043
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1401 97.14% 2.86%
All Indica796 99.25% 0.75%
All Japonica483 93.79% 6.21%
Aus66 98.48% 1.52%
Indica I374 99.20% 0.80%
Indica II212 98.58% 1.42%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica332 100.00% 0.00%
Tropical Japonica85 64.71% 35.29%
Japonica Intermediate66 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1114678043 T->C LOC_Os11g26440(LOC_Os11g26440.1) Synonymous