Detailed information of SNP:
|
SNP ID:
sf1114678043(Gbrowse)
Chromosome: chr11 Position: 14678043 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 97.14% | 2.86% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 483 | 93.79% | 6.21% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 64.71% | 35.29% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114678043 | T->C | LOC_Os11g26440(LOC_Os11g26440.1) | Synonymous |