Detailed information of SNP:
|
SNP ID:
sf1114686286(Gbrowse)
Chromosome: chr11 Position: 14686286 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 54.04% | 45.96% |
| All Indica | 778 | 83.80% | 16.20% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 208 | 76.92% | 23.08% |
| Indica Intermediate | 198 | 90.40% | 9.60% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114686286 | C->A | INTERGENIC | None |