Detailed information of SNP:
|
SNP ID:
sf1114695853(Gbrowse)
Chromosome: chr11 Position: 14695853 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.59% | 2.41% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114695853 | T->A | INTERGENIC | None |