Detailed information of SNP:
|
SNP ID:
sf1114734615(Gbrowse)
Chromosome: chr11 Position: 14734615 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 95.04% | 4.96% |
| All Indica | 779 | 93.71% | 6.29% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 368 | 92.39% | 7.61% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114734615 | C->T | LOC_Os11g26520(LOC_Os11g26520.1) | Synonymous |