Detailed information of SNP:
|
SNP ID:
sf1114747396(Gbrowse)
Chromosome: chr11 Position: 14747396 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 92.70% | 7.30% |
| All Indica | 778 | 88.69% | 11.31% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 363 | 89.81% | 10.19% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 205 | 85.85% | 14.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114747396 | C->T | LOC_Os11g26540(LOC_Os11g26540.1) | Synonymous |