Detailed information of SNP:
|
SNP ID:
sf1114779375(Gbrowse)
Chromosome: chr11 Position: 14779375 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 51.31% | 48.69% |
| All Indica | 682 | 83.14% | 16.86% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 320 | 87.19% | 12.81% |
| Indica II | 163 | 81.60% | 18.40% |
| Indica Intermediate | 199 | 77.89% | 22.11% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114779375 | C->T | INTERGENIC | None |