Detailed information of SNP:
|
SNP ID:
sf1114796840(Gbrowse)
Chromosome: chr11 Position: 14796840 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 64.05% | 35.95% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 494 | 4.05% | 95.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 4.22% | 95.78% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114796840 | G->C | LOC_Os11g26630(LOC_Os11g26630.1) | Non-Synonymous SNP |