Detailed information of SNP:
|
SNP ID:
sf1114811947(Gbrowse)
Chromosome: chr11 Position: 14811947 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 87.83% | 12.17% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 452 | 67.92% | 32.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 301 | 89.37% | 10.63% |
| Tropical Japonica | 86 | 6.98% | 93.02% |
| Japonica Intermediate | 65 | 49.23% | 50.77% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114811947 | C->T | LOC_Os11g26670(LOC_Os11g26670.1) | Non-Synonymous SNP |