Detailed information of SNP:
|
SNP ID:
sf1114882128(Gbrowse)
Chromosome: chr11 Position: 14882128 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 84.09% | 15.91% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 439 | 55.81% | 44.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 301 | 70.76% | 29.24% |
| Tropical Japonica | 76 | 6.58% | 93.42% |
| Japonica Intermediate | 62 | 43.55% | 56.45% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114882128 | T->C | INTERGENIC | None |