Detailed information of SNP:
|
SNP ID:
sf1114909819(Gbrowse)
Chromosome: chr11 Position: 14909819 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 94.86% | 5.14% |
| All Indica | 792 | 99.24% | 0.76% |
| All Japonica | 467 | 88.65% | 11.35% |
| Aus | 30 | 80.00% | 20.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 306 | 84.97% | 15.03% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114909819 | T->C | INTERGENIC | None |