Detailed information of SNP:
|
SNP ID:
sf1114915477(Gbrowse)
Chromosome: chr11 Position: 14915477 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.55% | 21.45% |
| All Indica | 798 | 65.79% | 34.21% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114915477 | G->T | INTERGENIC | None |