Detailed information of SNP:
|
SNP ID:
sf1114922603(Gbrowse)
Chromosome: chr11 Position: 14922603 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.92% | 43.08% |
| All Indica | 797 | 32.75% | 67.25% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 209 | 43.54% | 56.46% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114922603 | G->A | INTERGENIC | None |