Detailed information of SNP:
|
SNP ID:
sf1114946279(Gbrowse)
Chromosome: chr11 Position: 14946279 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.45% | 40.55% |
| All Indica | 798 | 38.22% | 61.78% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114946279 | G->A | INTERGENIC | None |