Detailed information of SNP:
|
SNP ID:
sf1114954855(Gbrowse)
Chromosome: chr11 Position: 14954855 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 57.12% | 42.88% |
| All Indica | 796 | 87.56% | 12.44% |
| All Japonica | 492 | 3.25% | 96.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 76.88% | 23.12% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 331 | 3.93% | 96.07% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114954855 | T->C | INTERGENIC | None |