Detailed information of SNP:
|
SNP ID:
sf1114994009(Gbrowse)
Chromosome: chr11 Position: 14994009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.31% | 18.69% |
| All Indica | 799 | 74.59% | 25.41% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114994009 | G->A | INTERGENIC | None |