Detailed information of SNP:
|
SNP ID:
sf1115015714(Gbrowse)
Chromosome: chr11 Position: 15015714 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 75.51% | 24.49% |
| All Indica | 797 | 64.37% | 35.63% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 210 | 55.71% | 44.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115015714 | A->C | INTERGENIC | None |