Detailed information of SNP:
|
SNP ID:
sf1115016929(Gbrowse)
Chromosome: chr11 Position: 15016929 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 86.18% | 13.82% |
| All Indica | 794 | 78.84% | 21.16% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 210 | 55.24% | 44.76% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115016929 | A->T | INTERGENIC | None |