Detailed information of SNP:



SNP ID: sf1115017227(Gbrowse)

Chromosome: chr11

Position: 15017227
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 66.34% 33.66%
All Indica797 45.17% 54.83%
All Japonica497 99.40% 0.60%
Aus67 64.18% 35.82%
Indica I373 26.27% 73.73%
Indica II213 61.03% 38.97%
Indica Intermediate211 62.56% 37.44%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1115017227 C->T INTERGENIC None