Detailed information of SNP:
|
SNP ID:
sf1115017227(Gbrowse)
Chromosome: chr11 Position: 15017227 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.34% | 33.66% |
| All Indica | 797 | 45.17% | 54.83% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 373 | 26.27% | 73.73% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115017227 | C->T | INTERGENIC | None |