Detailed information of SNP:
|
SNP ID:
sf1115023909(Gbrowse)
Chromosome: chr11 Position: 15023909 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.49% | 34.51% |
| All Indica | 797 | 43.79% | 56.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 23.26% | 76.74% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115023909 | G->A | INTERGENIC | None |